资源导航

41. Diffreps: diffReps is developed to find different peaks in ChIP-seq. It scans the whole genome using a sliding window, performing millions of statistical tests and report the significant hits. diffReps takes into account the biological variations within a group of samples and uses that informatio...; 标签：ChIP-Seq
42. ChIPseqR: ChIP-seq qanalysis tool; 标签：ChIP-Seq
43. SeqSite: SeqSite is an efficient and easy-to-use software tool implementing a novel method for identifying and pinpointing transcription factor binding sites. It first detects transcription factor binding regions by clustering tags and statistical hypothesis testing, and locates every binding si...; 标签：ChIP-Seq
44. Partek Genomics Suite: Easy to use software providing A to Z analysis for all Next Generation Sequencing and Microarray data.; 标签：Allele-specific transcription,RNA-Seq Quantitation,Epigenomics, Functional Genomics, ChIP-Seq,Alternative Splicing, SNP discovery, Small RNA transcriptome
45. ChIP-Seq (application): The ChIP-Seq web server provides access to a set of useful tools performing common ChIP-Seq data analysis tasks, including positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-poor regions. It is an open system designed to allow interopera...; 标签：ChIP-Seq
46. Avadis NGS: Strand NGS formerly Avadis NGS is a desktop software platform for alignment, analysis, visualization, and management of data generated by next-generation sequencing (NGS) platforms. It supports workflows for RNA-Seq, DNA-Seq, small RNA-Seq, ChIP-Seq, and Methyl-Seq data analysis. Strand...; 标签：ChIP-Seq, DNA-Seq, RNA-Seq,Small RNA, Methyl-Seq, Pathway analysis
47. CATCH: A tool for exploring patterns in ChIP profiling data.; 标签：ChIP-Seq, ChIP-on-chip
48. SPP: R-scripts for ChIP-seq analysis.; 标签：Genomics, ChIP-Seq
49. Genomatix Mining Station (GMS): The Genomatix Mining Station (GMS) offers mapping of NGS reads onto genomes, transcriptomes and splice-junction libraries. It is a client-server based solution and can be controlled through an intuitive GUI or via command-line. It covers different tasks such as, as genomic positioning, ...; 标签：RNA-Seq, SNP discovery, ChIP-Seq
50. DeepTools: User-friendly tools for the normalization and visualization of deep-sequencing data.; 标签：Genomics, ChIP-Seq
51. Samscope: Samscope is a lightweight SAM/BAM file viewer that makes visually exploring next generation sequencing data as intuitive as Google Maps. Samscope uses multiple layers to simultaneously (or sequentially) view SAM/BAM related features like coverage or allele frequency, or ChIP-SEQ feature...; 标签：ChIP-Seq, RNA-Seq, Genomics
52. ChIPmeta: Combining data from ChIP-seq and ChIP-chip.; 标签：Transcription Factor Binding Site identification, ChIP-Seq,ChIP-on-chip
53. GenoMiner: A proprietary NGS analysis solution. Powerful hardware comes with preinstalled software, organized in workflows.; 标签：Reference assembly, De-novo assembly, ChIP-Seq, RNA-Seq
54. MochiView: Hybrid genome browser and motif visualization/analysis/management desktop software.; 标签：Genomics, ChIP-Seq, ChIP-on-chip, RNA-Seq, Motif analysis
55. NarrowPeaks: Analysis of variation in ChIP-seq using functional PCA; 标签：ChIP-Seq
56. PeakSeq: 标签：ChIP-Seq
57. QSeq: QSeq is DNASTAR's Next-Gen application for RNA-Seq,ChIP-Seq, and miRNA alignment and analysis.; 标签：ChIP-Seq, RNA-Seq, MiRNA
58. Syapse: Syapse is a platform and application suite for bringing together omics and clinical data.; 标签：Allele-specific transcription,DNA methylation, DNA-Seq,InDel discovery, SNP discovery, Structural variation, RNA-Seq, Small RNA transcriptome, ChIP-Seq,Comparative genomics,Comparative transcriptomics,Epigenomics, Genomics,Personal genomics, Population ge

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