标签云

Alignment Allele-specific transcription Alternative Splicing Barcoding Bisulfite Sequencing Cancer biology ChIP-exo ChIP-on-chip ChIP-Seq Clone verification Comparative genomics Comparative transcriptomics Comparison Conversion Copy number estimation De novo assembly De novo sequencing De-novo assembly DNA methylation DNA-Seq Epigenomics Evaluation and validation Exome and whole genome variant detection Framework Functional Genomics Gene expression Gene regulatory network analysis General bioinformatics (pipeline) Genomic Assembly Genomic Assembly Evaluation Genomic Assembly Validation Genomics Identification InDel discovery Infrastructure Mapping Mass Accuracy Metagenomics Metatranscriptomics Next Generation Sequencing Nucleic acid sequence analysis Nucleic acid structure comparison Pairwise structure alignment Peptide identification (DB) Peptide identification (De novo) Peptide identification (lib match) Personal genomics Phylogenetics Population genetics Population Genomics Protein Inference Quality Control Quantitation Raw Data Raw Data / Conversion Read alignment Reference assembly Regulatory genomics Regulatory genomics epigenomics Resequencing Results processing RNA structure prediction RNA-Seq RNA-Seq Alignment RNA-Seq Quantitation Search and retrieval Sequence analysis Sequence database search Sequence functional annotation Sequence motif discovery Sequence motif recognition Sequence Quality Control Sequencing Small RNA transcriptome SNP Annotation SNP discovery SNPs Somatic mutations Structural variation Targeted assembly Targeted resequencing Transcription Factor Binding Site identification Transcriptome Viral genomics Whole gene prediction Whole Genome Resequencing Whole Genome Resequencing Analysis  Alignment  Alternative Splicing  Bisulfite Sequencing  ChIP-on-chip  ChIP-Seq  De novo assembly  De novo transcriptome assembly  De-novo assembly  DNA methylation  DNA-Seq  Exome and Whole genome variant detection  Fusion finding  Fusion genes  Fusion transcripts  Genomic Assembly  Genomics  Genotyping  High-throughput sequencing  In vitro selection  InDel discovery  Mapping  Metagenomics  MiRNA  MiRNA-Seq  Motif analysis  Next Generation Sequencing  Personal genomics  Phylogenetics  Population genetics  Population genomics  Read alignment  Reference assembly  Regulatory genomics  RNA Seq analysis  RNA-Seq  RNA-Seq Quantitation  Sequence analysis  Sequence annotation  Sequencing  Small RNA transcriptome  SNP discovery  Structural variation  Targeted resequencing  Transcription Factor Binding Site identification  Transcriptomics  Whole Genome Resequencing  Whole Genome Resequencing Analysis 基因组注释 基因预测 多重序列比对 多重比对 序列拼接 推荐 比较基因组 重复序列
821. Gblocks
Gblocks is a computer program written in ANSI C language that eliminates poorly aligned positions and divergent regions of an alignment of DNA or protein sequences. These positions may not be homologous or may have been saturated by multiple substitutions and it is convenient to elimina...
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822. GeneMark-hmm-E
Gene discovery for eukaryotic genomes. Gene discovery for eukaryotic genomes.
标签:Whole gene prediction
823. genofrag
Software to design primers Software to design primers
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824. Gibbs
The Gibbs Motif Sampler will allow you to identify motifs, conserved regions, in DNA or protein sequences. The Gibbs Motif Sampler will allow you to identify motifs, conserved regions, in DNA or protein sequences.
标签:Sequence motif discovery
825. go-perl
go-perl is a collection of perl modules for working with ontologies and data, in particular the Gene Ontology and other Open Bio-Ontologies. go-perl is a collection of perl modules for working with ontologies and data, in particular the Gene Ontology and other Open Bio-Ontologies.
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826. Graphviz
Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks.
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827. grappe
grappe is a pattern matching program. It looks, in a text, for a set of patterns containing don't care symbols (wildcards) of unbounded or bounded length. The size of patterns, as well as their length, is unlimited. grappe is a pattern matching program. It looks, in a text, for a set o...
标签:Sequence motif recognition
828. html4blast
html4blast is a simple hypertext Blast output formatter. html4blast is a simple hypertext Blast output formatter.
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829. ILM
NC
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830. ilog
Concert Technology allows the user to describe a model that is quite similar to the natural mathematical programming description.ILOG Concert Technology provides a set of lightweight C++, Java and .NET objects for representing optimization problems. It is included as part of ILOG CPLEX,...
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831. interproscan
InterProScan is a tool that combines different protein signature recognition methods into one resource. InterProScan is a tool that combines different protein signature recognition methods into one resource.
标签:Sequence motif recognition
832. IThOS
IThOS is a software package dedicated to the design of primers IThOS is a software package dedicated to the design of primers
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833. k2r
K2R reads a KAKSI XML output (.kxo) and outputs a lot of different informations in raw formats (mainly FASTA format), see k2r -h K2R reads a KAKSI XML output (.kxo) and outputs a lot of different informations in raw formats (mainly FASTA format), see k2r -h
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834. kaksi
"KAKSI takes a PDB file as input (or a PDB code if you have a mirror of the PDB on your computer) and prints an XML output with a lot of informations from the PDB file and the secondary structure assignment." "KAKSI takes a PDB file as input (or a PDB code if you have a mirror of the P...
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835. Kepler
The Kepler Project is dedicated to furthering and supporting the capabilities, use, and awareness of the free and open source, scientific workflow application, Kepler. Kepler is designed to help scien­tists, analysts, and computer programmers create, execute, and share models and analys...
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836. koriblast
Koriblast permet d'effectuer des requ Koriblast permet d'effectuer des requ
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837. libsigsegv
library for handling page faults in user mode. library for handling page faults in user mode.
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838. logol
Expressive pattern modelling and search in DNA/protein sequence Expressive pattern modelling and search in DNA/protein sequence
标签:Sequence motif recognition
839. martservice
Script perl permettant la récupération de données en provenance de BioMart. Script perl permettant la récupération de données en provenance de BioMart.
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840. MEME
The MEME Suite allows you to: * discover motifs using MEME or GLAM2 on groups of related DNA or protein sequences, * search sequence databases using motifs, * compare a motif to all motifs in a database of motifs, and * associate motifs with Gene Ontology terms via their putative target...
标签:Sequence motif recognition