From Proxeon (formerly Protana). ProteinCenter™ is a web-based data interpretation tool that enables scientists to compare and interpret data sets in minutes instead of months.
MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric data sets. It is specifically aimed at high resolution MS data.
MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric data sets. It is...
VIPER (Visual Inspection of Peak/Elution Relationships) can be used to visualize and characterize the features detected during LC-MS analyses. It is primarily intended for processing deisotoped data from high mass measurement accuracy instruments (e.g. FT, TOF, or Orbitrap) and comparin...
A component of MSQuant. It creates MGF peak lists from raw files, retaining the retention time and scan number information required by MSQuant. It requires Xcalibur (including the XDK) and Microsoft .NET 2.0 or later to be installed. It is not clear whether it can be made to run stand-a...
SEQUEST 3G is the latest, next-generation SEQUEST standard specifically developed and optimized for translational proteomic applications involving phosphorylation and other post-translational modifications (PTMs). SEQUEST 3G defines a single common standard for similarity scores, search...
This software has a very simple, sophisticated application programming interface (API): it simply takes an XML file of instructions on its command line, and outputs the results into an XML file, which has been specified in the input XML file. Unlike some earlier generation search engine...
The Open Mass Spectrometry Search Algorithm [OMSSA] is an efficient search engine for identifying MS/MS peptide spectra by searching libraries of known protein sequences. OMSSA scores significant hits with a probability score developed using classical hypothesis testing, the same statis...