资源导航

121. CleaveLand: A pipeline for using degradome data to find cleaved small RNA targets.; 标签：MiRNA
122. VAAST: Variant Annotation, Analysis and Search Tool; 标签：Structural variation
123. SNIP-Seq: Tool for discovering SNPs in population sequencing data; 标签：SNP discovery
124. SolexaQA: User-friendly software package designed to generate detailed statistics and at-a-glance graphics of sequence data quality both quickly and in an automated fashion. This package contains associated software to trim sequences dynamically using the quality scores of bases within individual...; 标签：
125. Segemehl: Map short reads to known genome with tolerance for mismatches and indels using suffix arrays for high accuracy matching; 标签：Genomics
126. ShoRAH: Inference of a population from a set of short reads. The package contains programs that support mapping of reads to a reference genome, correcting sequencing errors by locally clustering reads in small windows of the alignment, reconstructing a minimal set of global haplotypes that expl...; 标签：Metagenomics
127. CRISP: Identifies rare and common variants in pooled sequencing data; 标签：SNP discovery
128. BSMAP: short reads mapping software for bisulfite sequencing; 标签：DNA methylation
129. NPS: Identify nucleosome positions given histone-modification ChIP-seq or nucleosome sequencing at the nucleosome level.; 标签：Epigenomics, ChIP-Seq
130. Myrna: Myrna is a cloud computing tool for calculating differential gene expression in large RNA-seq datasets.; 标签：RNA-Seq Quantitation, RNA-Seq Alignment
131. Solas: Given gene annotation the major questions addressed by the package are: prediction of alternative exons in a single condition / cell sample, prediction of differential alternative exons between two conditions / cell samples, quantification of alternative splice forms in a single conditi...; 标签：RNA-Seq Quantitation,Alternative Splicing
132. SOCS: SOLiD reference based, un-gapped alignment with bisulfite capability; 标签：RNA-Seq Alignment, DNA methylation, SNP discovery
133. MUMmerGPU: MUMmerGPU is a low cost, ultra-fast sequence alignment program designed to handle the increasing volume of data produced by HTS.; 标签：Genomics, Transcriptomics
134. SeqAn: C++ template library with many sequence analysis algorithms and datastructures.; 标签：Sequence analysis, Genomics,Phylogenetics
135. HawkEye: An interactive visual analytics tool for genome assemblies.; 标签：
136. BayesPeak: A Bayesian hidden Markov model to detect enriched locations in ChIP-seq data.; 标签：ChIP-Seq
137. PatMaN: Patman searches for short patterns in large DNA databases, allowing for approximate matches. It is optimized for searching for many small pattern at the same time, for example microarray probes.; 标签：
138. BS Seeker: Mapping tool for bisulfite treated reads; 标签：Epigenomics
139. CNVer: CNVer is a method for CNV detection that supplements the depth-of-coverage with paired-end mapping information, where matepairs mapping discordantly to the reference serve to indicate the presence of variation. CNVer combines this information within a unified computational framework cal...; 标签：Structural variation, Copy number estimation
140. YASS: YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces local pairwise alignments).; 标签：

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